Yıl: 2022 Cilt: 9 Sayı: 3 Sayfa Aralığı: 299 - 313 Metin Dili: İngilizce DOI: 10.54287/gujsa.1160449 İndeks Tarihi: 01-10-2022

Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes

Öz:
Molecular docking process was performed to investigate the interactions between the synthesized compounds and human epidermal growth factor protein kinase domain EGFR (PDB ID:1M17) and cyclin-dependent kinase-2 CDK2 (PDB ID:3IG7) proteins. HOMO LUMO orbital energy analysis, quantum chemical calculations were made and the bioactivity parameters of the compounds were evaluated. NiII and CuII complexes of the L1H2 L2H2 and L3H2, ligands showed higher binding affinity to EGFR and CDK2. Especially, [Cu(L1H)2] and [Cu(L2H)2] complexes can be suggested as hit compounds against CDK2 and EGFR, respectively. These were supported by the inhibition constant values which were the lowest when compared to others. L1H2 L2H2 and L3H2, ligands had the lowest binding energy values when compared to metal complexes. Also, [Cu(L2H)2] complex had a high binding energy value against EGFR. [Ni(L2H)2] and [Cu(L2H)2] complexes with EGFR had the highest LE and FQ values and these were found to be in the recommended range. Furthermore, [Cu(L3H)2] had an acceptable FQ value however its LE value was out of range. Besides, [Cu(L2H)2] had a potent and sufficient electrophile ability (acceptor) among other compounds. In conclusion, these compounds may be suitable compounds for further analysis in anti-cancer drug development with low toxic and targeted properties.
Anahtar Kelime: vic-dioxim Hydrazones Molecular Docking HOMO-LUMO Bioactivity

Belge Türü: Makale Makale Türü: Araştırma Makalesi Erişim Türü: Erişime Açık
  • Accelrys. (2014). Discovery Studio Visualizer Software. San Diego, CA: Accelrys.
  • Allal, H., Belhocine, Y., & Zouaoui, E. (2018). Computational study of some thiophene derivatives as aluminum corrosion inhibitors. Journal of Molecular Liquids, 265, 668-678. doi:10.1016/j.molliq.2018.05.099
  • Altamimi, A. S., El-Azab, A. S., Abdelhamid, S. G., Alamri, M. A., Bayoumi, A. H., Alqahtani, S. M., Alabbas, A. B., Altharawi, A. I., Alossaimi, M. A., & Mohamed, M. A. (2021). Synthesis, Anticancer Screening of Some Novel Trimethoxy Quinazolines and VEGFR2, EGFR Tyrosine Kinase Inhibitors Assay; Molecular Docking Studies. Molecules, 26, 2992. doi:10.3390/molecules26102992
  • Canpolat, E., & Kaya, M. (2005). Synthesis and formation of a new vic-dioxime complexes. Journal of Coordination Chemistry, 58(14), 1217-1224. doi:10.1080/00958970500130501
  • DeLano, W. L. (2013). The PyMOL Molecular Graphics System. San Carlos, CA: DeLano Scientific LLC. http://www.pymol.org
  • Ferdous, J., & Kawsar, S. M. A. (2020). Thermochemical, Molecular Docking and ADMET Studies of Some Methyl α-D-Glucopyranoside Derivatives. The Chittagong University Journal of Science, 42(1), 58-83. doi:10.3329/cujs.v42i1.54238
  • Fouad, R., & Adly, O. M. I. (2021). Novel Cu2+ and Zn2+ nanocomplexes drug based on hydrazone ligand bearings chromone and triazine moieties: Structural, spectral, DFT, molecular docking and cytotoxic studies. Journal of Molecular Structure, 1225, 129158. doi:10.1016/j.molstruc.2020.129158
  • Haider, K., Rehman, S., Pathak, A., Najmi, A. K., & Yar, M. S. (2021). Advances in 2 substituted benzothiazole scaffold based chemotherapeutic agents. Archiv der Pharmazie, 354(12), e2100246. doi:10.1002/ardp.202100246
  • Horchani, M., Della Sala, G., Caso, A., D’Aria, F., Esposito, G., Laurenzana, I., Giancola, C., Costantino, V., Jannet, H. B., & Romdhane, A. (2021). Molecular Docking and Biophysical Studies for Antiproliferative Assessment of Synthetic Pyrazolo-Pyrimidinones Tethered with Hydrazide-Hydrazones. International Journal of Molecular Sciences, 22, 2742. doi:10.3390/ijms22052742
  • Knizia, G. (2022) IboView, Version 20150427, http://www.iboview.org, Accessed: 18/072022
  • Koopmans, T. (1934). Über die Zuordnung von Wellenfunktionen und Eigenwerten zu den einzelnen Elektronen eines Atoms. Physica, 1(1-6), 104–113. doi:10.1016/S0031-8914(34)90011-2
  • Kurtoglu, M., & Baydemir, S.A. (2007). Studies on Mononuclear Transition Metal Chelates Derived from a Novel (E, E)-Dioxime: Synthesis, Characterization and Biological Activity. Journal of Coordination Chemistry, 60(6), 655-665. doi:10.1080/00958970600896076
  • Park, H.-J., Lee, K., Park, S.-J., Ahn, B., Lee, J.-C., Cho, H., & Lee, K.-I. (2005). Identification of Antitumor Activity of Pyrazole Oxime Ethers. Bioorganic and Medicinal Chemistry Letters, 15(13), 3307-3312. doi:10.1016/j.bmcl.2005.03.082
  • Rija, A., Bulhac, I., Coropceanu, E., Gorincioi, E., Calmîc, E., Barba, A., & Bologa, O. (2011). Synthesis and Spectroscopic Study of some Coordinative Compounds of Co(III), Ni(II) and Cu(II) with Dianiline- and Disulfanilamideglyoxime. Chemistry Journal of Moldova, 6(2), 73-78. doi:10.19261/cjm.2011.06(2).16
  • Rupa, S. A., Moni, M. R., Patwary, M. A. M., Mahmud, M. M., Haque, M. A., Uddin, J., & Abedin, S. M. T. (2022). Synthesis of Novel Tritopic Hydrazone Ligands: Spectroscopy, Biological Activity, DFT, and Molecular Docking Studies. Molecules, 27(5), 1656. doi:10.3390/molecules27051656
  • Sarikavakli, N., & Irez, G. (2005). Synthesis and Complex Formation of Some Novel vicDioxime Derivatives of Hydrazones. Turkish Journal of Chemistry, 29(1), 107-116.
  • Sarikavakli, N., & Cakici, H. T. (2012). Synthesis and Characterization of Novel (Z, E)-vic-dioximes and their Transition Metal Complexes. Asian Journal of Chemistry, 24(3), 2643.
  • Serin, S. (2001). New vic-dioxide transition metal complexes. Transition Metal Chemistry, 26(3), 300-306. doi:10.1023/A:1007163418687
  • Smith, A. G., Tasker, P. A., & White, D. J. (2003). The Structures of Phenolic Oximes and their Complexes. Coordination Chemistry Reviews, 241(1-2), 61-85. doi:10.1016/S0010-8545(02)00310-7
  • Soga, S., Sharma, S., Shiotsu, Y., Shimizu, M., Tahara, H., Yamaguchi, K., Ikuina, Y., Murakata, C., Tamaoki, T., Kurebayashi, J., Schulte, T., Neckers L., & Akinaga, S. (2001). Stereospecific Antitumor Activity of Radicicoloxime Derivatives. Cancer Chemotherapy Pharmacology, 48(6), 435-445. doi:10.1007/s002800100373
  • Sulaiman, K. O., Kolapo, T. U., Onawole, A. T., Islam, A., Adegoke, R. O., & Badmus, S. O. (2019). Molecular dynamics and combined docking studies for the identification of Zaire ebola virus inhibitors. Journal of Biomolecular Structure and Dynamics, 37(12), 3029-3040. doi:10.1080/07391102.2018.1506362
  • Trott, O., & Olson, A. J. (2009). AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. The Journal of Computational Chemistry, 31, 455-461. doi:10.1002/jcc.21334
  • Tschugaeff, L. (1907). Über eine neue synthese der α-diketone. European Journal of Inorganic Chemistry. 40(1), 186-187. doi:10.1002/cber.19070400127
APA ÇALIŞKAN Ş, GENÇ O, erol f, Sarikavakli N (2022). Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes. , 299 - 313. 10.54287/gujsa.1160449
Chicago ÇALIŞKAN Şerife Gökçe,GENÇ Onur,erol fatma,Sarikavakli Nursabah Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes. (2022): 299 - 313. 10.54287/gujsa.1160449
MLA ÇALIŞKAN Şerife Gökçe,GENÇ Onur,erol fatma,Sarikavakli Nursabah Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes. , 2022, ss.299 - 313. 10.54287/gujsa.1160449
AMA ÇALIŞKAN Ş,GENÇ O,erol f,Sarikavakli N Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes. . 2022; 299 - 313. 10.54287/gujsa.1160449
Vancouver ÇALIŞKAN Ş,GENÇ O,erol f,Sarikavakli N Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes. . 2022; 299 - 313. 10.54287/gujsa.1160449
IEEE ÇALIŞKAN Ş,GENÇ O,erol f,Sarikavakli N "Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes." , ss.299 - 313, 2022. 10.54287/gujsa.1160449
ISNAD ÇALIŞKAN, Şerife Gökçe vd. "Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes". (2022), 299-313. https://doi.org/10.54287/gujsa.1160449
APA ÇALIŞKAN Ş, GENÇ O, erol f, Sarikavakli N (2022). Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes. Gazi University Journal of Science Part A: Engineering and Innovation, 9(3), 299 - 313. 10.54287/gujsa.1160449
Chicago ÇALIŞKAN Şerife Gökçe,GENÇ Onur,erol fatma,Sarikavakli Nursabah Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes. Gazi University Journal of Science Part A: Engineering and Innovation 9, no.3 (2022): 299 - 313. 10.54287/gujsa.1160449
MLA ÇALIŞKAN Şerife Gökçe,GENÇ Onur,erol fatma,Sarikavakli Nursabah Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes. Gazi University Journal of Science Part A: Engineering and Innovation, vol.9, no.3, 2022, ss.299 - 313. 10.54287/gujsa.1160449
AMA ÇALIŞKAN Ş,GENÇ O,erol f,Sarikavakli N Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes. Gazi University Journal of Science Part A: Engineering and Innovation. 2022; 9(3): 299 - 313. 10.54287/gujsa.1160449
Vancouver ÇALIŞKAN Ş,GENÇ O,erol f,Sarikavakli N Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes. Gazi University Journal of Science Part A: Engineering and Innovation. 2022; 9(3): 299 - 313. 10.54287/gujsa.1160449
IEEE ÇALIŞKAN Ş,GENÇ O,erol f,Sarikavakli N "Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes." Gazi University Journal of Science Part A: Engineering and Innovation, 9, ss.299 - 313, 2022. 10.54287/gujsa.1160449
ISNAD ÇALIŞKAN, Şerife Gökçe vd. "Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes". Gazi University Journal of Science Part A: Engineering and Innovation 9/3 (2022), 299-313. https://doi.org/10.54287/gujsa.1160449