Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”

Yıl: 2023 Cilt: 47 Sayı: 1 Sayfa Aralığı: 1 - 13 Metin Dili: İngilizce DOI: 10.55730/1300-0152.2637 İndeks Tarihi: 22-03-2023

Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”

Öz:
X-ray crystallography is a robust and powerful structural biology technique that provides high-resolution atomic structures of biomacromolecules. Scientists use this technique to unravel mechanistic and structural details of biological macromolecules (e.g., proteins, nucleic acids, protein complexes, protein-nucleic acid complexes, or large biological compartments). Since its inception, single-crystal cryocrystallography has never been performed in Türkiye due to the lack of a single-crystal X-ray diffractometer. The X-ray diffraction facility recently established at the University of Health Sciences, İstanbul, Türkiye will enable Turkish and international researchers to easily perform high-resolution structural analysis of biomacromolecules from single crystals. Here, we describe the technical and practical outlook of a state-of-the-art home-source X-ray, using lysozyme as a model protein. The methods and practice described in this article can be applied to any biological sample for structural studies. Therefore, this article will be a valuable practical guide from sample preparation to data analysis.
Anahtar Kelime: X-ray crystallography light source structural biology atomic resolution drug repurposing drug development structural dynamics

Belge Türü: Makale Makale Türü: Araştırma Makalesi Erişim Türü: Erişime Açık
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APA Atalay N, Akcan E, Gul M, AYAN E, Destan E, Ertem F, TOKAY N, Çakılkaya B, NERGIZ Z, Karakadıoğlu Usta G, KEPCEOĞLU A, Yapıcı İ, Tosun B, Baldır N, YILDIRIM G, Johnson J, Guven O, SHAFIEI A, Arslan N, YILMAZ M, Kulakman C, Paydos S, Çinal Z, Şabanoğlu K, Pazarçeviren A, Yılmaz A, Canbay Z, Asci B, Kartal E, Tavlı S, Caliseki M, Goc G, Mermer A, Yesilay G, Altuntas S, TATEISHI H, Otsuka M, Fujita M, tekin s, Ciftci H, Durdagi S, Dinler Doganay G, Karaca E, Kaplan Türköz B, Kabasakal B, KATI A, Demirci H (2023). Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”. , 1 - 13. 10.55730/1300-0152.2637
Chicago Atalay Necati,Akcan Enver Kamil,Gul Mehmet,AYAN ESRA,Destan Ebru,Ertem Fatma Betul,TOKAY NURETTİN,Çakılkaya Barış,NERGIZ ZELIS,Karakadıoğlu Usta Gözde,KEPCEOĞLU Abdullah,Yapıcı İlkin,Tosun Bilge,Baldır Nilüfer,YILDIRIM GÜNSELİ,Johnson J Austin,Guven Omur,SHAFIEI ALALEH,Arslan Nazlı Eylül,YILMAZ Merve,Kulakman Cahine,Paydos Seyide Seda,Çinal Zeynep Sena,Şabanoğlu Kardelen,Pazarçeviren Ayşegül,Yılmaz Ayşenur,Canbay Zeynep Başak,Asci Bengisu,Kartal Esra,Tavlı Serra,Caliseki Mehmet,Goc Gunce,Mermer Arif,Yesilay Gamze,Altuntas Sevde,TATEISHI HIROSHI,Otsuka Masami,Fujita Mikako,tekin saban,Ciftci Halilibrahim,Durdagi Serdar,Dinler Doganay Gizem,Karaca Ezgi,Kaplan Türköz Burcu,Kabasakal Burak Veli,KATI AHMET,Demirci Hasan Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”. (2023): 1 - 13. 10.55730/1300-0152.2637
MLA Atalay Necati,Akcan Enver Kamil,Gul Mehmet,AYAN ESRA,Destan Ebru,Ertem Fatma Betul,TOKAY NURETTİN,Çakılkaya Barış,NERGIZ ZELIS,Karakadıoğlu Usta Gözde,KEPCEOĞLU Abdullah,Yapıcı İlkin,Tosun Bilge,Baldır Nilüfer,YILDIRIM GÜNSELİ,Johnson J Austin,Guven Omur,SHAFIEI ALALEH,Arslan Nazlı Eylül,YILMAZ Merve,Kulakman Cahine,Paydos Seyide Seda,Çinal Zeynep Sena,Şabanoğlu Kardelen,Pazarçeviren Ayşegül,Yılmaz Ayşenur,Canbay Zeynep Başak,Asci Bengisu,Kartal Esra,Tavlı Serra,Caliseki Mehmet,Goc Gunce,Mermer Arif,Yesilay Gamze,Altuntas Sevde,TATEISHI HIROSHI,Otsuka Masami,Fujita Mikako,tekin saban,Ciftci Halilibrahim,Durdagi Serdar,Dinler Doganay Gizem,Karaca Ezgi,Kaplan Türköz Burcu,Kabasakal Burak Veli,KATI AHMET,Demirci Hasan Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”. , 2023, ss.1 - 13. 10.55730/1300-0152.2637
AMA Atalay N,Akcan E,Gul M,AYAN E,Destan E,Ertem F,TOKAY N,Çakılkaya B,NERGIZ Z,Karakadıoğlu Usta G,KEPCEOĞLU A,Yapıcı İ,Tosun B,Baldır N,YILDIRIM G,Johnson J,Guven O,SHAFIEI A,Arslan N,YILMAZ M,Kulakman C,Paydos S,Çinal Z,Şabanoğlu K,Pazarçeviren A,Yılmaz A,Canbay Z,Asci B,Kartal E,Tavlı S,Caliseki M,Goc G,Mermer A,Yesilay G,Altuntas S,TATEISHI H,Otsuka M,Fujita M,tekin s,Ciftci H,Durdagi S,Dinler Doganay G,Karaca E,Kaplan Türköz B,Kabasakal B,KATI A,Demirci H Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”. . 2023; 1 - 13. 10.55730/1300-0152.2637
Vancouver Atalay N,Akcan E,Gul M,AYAN E,Destan E,Ertem F,TOKAY N,Çakılkaya B,NERGIZ Z,Karakadıoğlu Usta G,KEPCEOĞLU A,Yapıcı İ,Tosun B,Baldır N,YILDIRIM G,Johnson J,Guven O,SHAFIEI A,Arslan N,YILMAZ M,Kulakman C,Paydos S,Çinal Z,Şabanoğlu K,Pazarçeviren A,Yılmaz A,Canbay Z,Asci B,Kartal E,Tavlı S,Caliseki M,Goc G,Mermer A,Yesilay G,Altuntas S,TATEISHI H,Otsuka M,Fujita M,tekin s,Ciftci H,Durdagi S,Dinler Doganay G,Karaca E,Kaplan Türköz B,Kabasakal B,KATI A,Demirci H Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”. . 2023; 1 - 13. 10.55730/1300-0152.2637
IEEE Atalay N,Akcan E,Gul M,AYAN E,Destan E,Ertem F,TOKAY N,Çakılkaya B,NERGIZ Z,Karakadıoğlu Usta G,KEPCEOĞLU A,Yapıcı İ,Tosun B,Baldır N,YILDIRIM G,Johnson J,Guven O,SHAFIEI A,Arslan N,YILMAZ M,Kulakman C,Paydos S,Çinal Z,Şabanoğlu K,Pazarçeviren A,Yılmaz A,Canbay Z,Asci B,Kartal E,Tavlı S,Caliseki M,Goc G,Mermer A,Yesilay G,Altuntas S,TATEISHI H,Otsuka M,Fujita M,tekin s,Ciftci H,Durdagi S,Dinler Doganay G,Karaca E,Kaplan Türköz B,Kabasakal B,KATI A,Demirci H "Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”." , ss.1 - 13, 2023. 10.55730/1300-0152.2637
ISNAD Atalay, Necati vd. "Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”". (2023), 1-13. https://doi.org/10.55730/1300-0152.2637
APA Atalay N, Akcan E, Gul M, AYAN E, Destan E, Ertem F, TOKAY N, Çakılkaya B, NERGIZ Z, Karakadıoğlu Usta G, KEPCEOĞLU A, Yapıcı İ, Tosun B, Baldır N, YILDIRIM G, Johnson J, Guven O, SHAFIEI A, Arslan N, YILMAZ M, Kulakman C, Paydos S, Çinal Z, Şabanoğlu K, Pazarçeviren A, Yılmaz A, Canbay Z, Asci B, Kartal E, Tavlı S, Caliseki M, Goc G, Mermer A, Yesilay G, Altuntas S, TATEISHI H, Otsuka M, Fujita M, tekin s, Ciftci H, Durdagi S, Dinler Doganay G, Karaca E, Kaplan Türköz B, Kabasakal B, KATI A, Demirci H (2023). Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”. Turkish Journal of Biology, 47(1), 1 - 13. 10.55730/1300-0152.2637
Chicago Atalay Necati,Akcan Enver Kamil,Gul Mehmet,AYAN ESRA,Destan Ebru,Ertem Fatma Betul,TOKAY NURETTİN,Çakılkaya Barış,NERGIZ ZELIS,Karakadıoğlu Usta Gözde,KEPCEOĞLU Abdullah,Yapıcı İlkin,Tosun Bilge,Baldır Nilüfer,YILDIRIM GÜNSELİ,Johnson J Austin,Guven Omur,SHAFIEI ALALEH,Arslan Nazlı Eylül,YILMAZ Merve,Kulakman Cahine,Paydos Seyide Seda,Çinal Zeynep Sena,Şabanoğlu Kardelen,Pazarçeviren Ayşegül,Yılmaz Ayşenur,Canbay Zeynep Başak,Asci Bengisu,Kartal Esra,Tavlı Serra,Caliseki Mehmet,Goc Gunce,Mermer Arif,Yesilay Gamze,Altuntas Sevde,TATEISHI HIROSHI,Otsuka Masami,Fujita Mikako,tekin saban,Ciftci Halilibrahim,Durdagi Serdar,Dinler Doganay Gizem,Karaca Ezgi,Kaplan Türköz Burcu,Kabasakal Burak Veli,KATI AHMET,Demirci Hasan Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”. Turkish Journal of Biology 47, no.1 (2023): 1 - 13. 10.55730/1300-0152.2637
MLA Atalay Necati,Akcan Enver Kamil,Gul Mehmet,AYAN ESRA,Destan Ebru,Ertem Fatma Betul,TOKAY NURETTİN,Çakılkaya Barış,NERGIZ ZELIS,Karakadıoğlu Usta Gözde,KEPCEOĞLU Abdullah,Yapıcı İlkin,Tosun Bilge,Baldır Nilüfer,YILDIRIM GÜNSELİ,Johnson J Austin,Guven Omur,SHAFIEI ALALEH,Arslan Nazlı Eylül,YILMAZ Merve,Kulakman Cahine,Paydos Seyide Seda,Çinal Zeynep Sena,Şabanoğlu Kardelen,Pazarçeviren Ayşegül,Yılmaz Ayşenur,Canbay Zeynep Başak,Asci Bengisu,Kartal Esra,Tavlı Serra,Caliseki Mehmet,Goc Gunce,Mermer Arif,Yesilay Gamze,Altuntas Sevde,TATEISHI HIROSHI,Otsuka Masami,Fujita Mikako,tekin saban,Ciftci Halilibrahim,Durdagi Serdar,Dinler Doganay Gizem,Karaca Ezgi,Kaplan Türköz Burcu,Kabasakal Burak Veli,KATI AHMET,Demirci Hasan Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”. Turkish Journal of Biology, vol.47, no.1, 2023, ss.1 - 13. 10.55730/1300-0152.2637
AMA Atalay N,Akcan E,Gul M,AYAN E,Destan E,Ertem F,TOKAY N,Çakılkaya B,NERGIZ Z,Karakadıoğlu Usta G,KEPCEOĞLU A,Yapıcı İ,Tosun B,Baldır N,YILDIRIM G,Johnson J,Guven O,SHAFIEI A,Arslan N,YILMAZ M,Kulakman C,Paydos S,Çinal Z,Şabanoğlu K,Pazarçeviren A,Yılmaz A,Canbay Z,Asci B,Kartal E,Tavlı S,Caliseki M,Goc G,Mermer A,Yesilay G,Altuntas S,TATEISHI H,Otsuka M,Fujita M,tekin s,Ciftci H,Durdagi S,Dinler Doganay G,Karaca E,Kaplan Türköz B,Kabasakal B,KATI A,Demirci H Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”. Turkish Journal of Biology. 2023; 47(1): 1 - 13. 10.55730/1300-0152.2637
Vancouver Atalay N,Akcan E,Gul M,AYAN E,Destan E,Ertem F,TOKAY N,Çakılkaya B,NERGIZ Z,Karakadıoğlu Usta G,KEPCEOĞLU A,Yapıcı İ,Tosun B,Baldır N,YILDIRIM G,Johnson J,Guven O,SHAFIEI A,Arslan N,YILMAZ M,Kulakman C,Paydos S,Çinal Z,Şabanoğlu K,Pazarçeviren A,Yılmaz A,Canbay Z,Asci B,Kartal E,Tavlı S,Caliseki M,Goc G,Mermer A,Yesilay G,Altuntas S,TATEISHI H,Otsuka M,Fujita M,tekin s,Ciftci H,Durdagi S,Dinler Doganay G,Karaca E,Kaplan Türköz B,Kabasakal B,KATI A,Demirci H Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”. Turkish Journal of Biology. 2023; 47(1): 1 - 13. 10.55730/1300-0152.2637
IEEE Atalay N,Akcan E,Gul M,AYAN E,Destan E,Ertem F,TOKAY N,Çakılkaya B,NERGIZ Z,Karakadıoğlu Usta G,KEPCEOĞLU A,Yapıcı İ,Tosun B,Baldır N,YILDIRIM G,Johnson J,Guven O,SHAFIEI A,Arslan N,YILMAZ M,Kulakman C,Paydos S,Çinal Z,Şabanoğlu K,Pazarçeviren A,Yılmaz A,Canbay Z,Asci B,Kartal E,Tavlı S,Caliseki M,Goc G,Mermer A,Yesilay G,Altuntas S,TATEISHI H,Otsuka M,Fujita M,tekin s,Ciftci H,Durdagi S,Dinler Doganay G,Karaca E,Kaplan Türköz B,Kabasakal B,KATI A,Demirci H "Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”." Turkish Journal of Biology, 47, ss.1 - 13, 2023. 10.55730/1300-0152.2637
ISNAD Atalay, Necati vd. "Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”". Turkish Journal of Biology 47/1 (2023), 1-13. https://doi.org/10.55730/1300-0152.2637