Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data

Nursel Ikinci (Abant İzzet Baysal Üniversitesi, Fen Edebiyat Fakültesi, Biyoloji Bölümü, Bolu, Türkiye)
Turkish Journal of Botany
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Yıl: 2011 Cilt: 35 Sayı: 4 Sayfa Aralığı: 319 - 330 Metin Dili: Türkçe İndeks Tarihi: 29-07-2022

Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data

Öz:
Bu çalışmada Lilium cinsi L. Liriotypus Asch. et Graebn. seksiyonunun i logenetiği ve biyocoğrafyası araştırılmışve Liriotypus seksiyonu için ayrışma tarihleri hesaplanmıştır. Çalışma grubu Avrupa, İtalya ve Balkan yarımadaları,Anadolu ve Kak as Lilium türlerinden oluşmaktadır. Liriotypus seksiyonunun i logenetik geçmişini ortaya çıkarmak içinplastid DNA dizi verisi (trnC-petN intergenic spacer ve petN geni) ve çekirdek DNA’sı ITS (Internal transcribed spacer)dizi verileri kullanılmıştır. Liriotypus seksiyonu içerisindeki türlerin birbirlerinden ve diğer Lilium türlerinden ayrışmatarihleri çekirdek DNA’sı ITS bölgesi kullanılarak moleküler saat hipotezi gözönünde bulundurularak moleküler i logeniktarihleme ile hesaplanmıştır. Plastid ve çekirdek DNA dizilerinin birleştirilmesi sonucu yapılan i logenetik analizincelenen Liriotypus seksiyonu türlerinin güçlü bir destekle monoi letik bir grup oluşturduklarını göstermiştir. Ancak, plastid DNA’sı ile birleştirilmiş verilerden yola çıkılarak yapılan analizler L. monadelphum M.Bieb., L. szovitsianumFisch. & Avé-Lall., L. ciliatum P.H.Davis ve L. akkusianum R.Gämperle türlerinin pozisyonu konusunda farklı sonuçlarvermiştir. Çekirdek DNA’sı ITS dizi verisine dayalı moleküler tarihleme analizi Liriotypus seksiyonu üyelerinin Liliumcinsinin diğer türlerinden yaklaşık dokuz milyon yıl önce ayrıldığını ve bu seksiyon içinde türleşmenin son altı milyonyıl içinde arttığını göstermiştir.
Anahtar Kelime: çekirdek moleküler taksonomi plastit Lilium ribozomal DNA Liriotypus DNA DNA dizi analizi türleşme ayrışma tarihi filogeni

Konular: Biyoloji

Lilium cinsi Liriotypus seksiyonunun (Liliaceae) plastid ve çekirdek ribozomal DNA ITS dizi verilerine dayalı moleküler filogenetiği ve ayrışma tarihlerinin hesaplanması

Öz:
In the present study the phylogeny and the biogeography of the genus Lilium L. section Liriotypus Asch.et Graebn. were investigated and divergence times for the section Liriotypus were calculated. h e study group coversLilium species from Europe, the Italian and Balkan peninsulas, Anatolia, and the Caucasus. Plastid DNA sequencedata (the trnC-petN intergenic spacer and petN gene) and nuclear DNA ITS sequence data were used to infer thephylogenetic history of the section Liriotypus. Molecular phylogenetic dating using the molecular clock hypothesis withsequences of nrDNA ITS region was used to calculate the time of diversii cation within the section Liriotypus and withother members of the genus Lilium. h e phylogenetic reconstruction based on combined analysis of plastid and nrDNAITS sequence data shows that all of the analysed species of section Liriotypus form a well-supported monophyletic clade.However, there are some incongruences between the analysis made by plastid DNA alone and with a combined datasetregarding the positions of L. monadelphum M.Bieb., L. szovitsianum Fisch. & Avé-Lall., L. ciliatum P.H.Davis, and L.akkusianum R.Gämperle. Our molecular dating analysis based on nrDNA ITS sequence data showed that members ofthe section Liriotypus were separated from the rest of the genus Lilium approximately 9 million years ago and within thissection, speciation increased in the last 6 million years.
Anahtar Kelime: speciation divergence times phylogeny nuclei molecular taxonomy plastids Lilium ribosomal DNA Liriotypus DNA DNA sequencing

Konular: Biyoloji
Belge Türü: Makale Makale Türü: Araştırma Makalesi Erişim Türü: Erişime Açık
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APA Ikinci N (2011). Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data. , 319 - 330.
Chicago Ikinci Nursel Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data. (2011): 319 - 330.
MLA Ikinci Nursel Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data. , 2011, ss.319 - 330.
AMA Ikinci N Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data. . 2011; 319 - 330.
Vancouver Ikinci N Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data. . 2011; 319 - 330.
IEEE Ikinci N "Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data." , ss.319 - 330, 2011.
ISNAD Ikinci, Nursel. "Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data". (2011), 319-330.
APA Ikinci N (2011). Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data. Turkish Journal of Botany, 35(4), 319 - 330.
Chicago Ikinci Nursel Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data. Turkish Journal of Botany 35, no.4 (2011): 319 - 330.
MLA Ikinci Nursel Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data. Turkish Journal of Botany, vol.35, no.4, 2011, ss.319 - 330.
AMA Ikinci N Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data. Turkish Journal of Botany. 2011; 35(4): 319 - 330.
Vancouver Ikinci N Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data. Turkish Journal of Botany. 2011; 35(4): 319 - 330.
IEEE Ikinci N "Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data." Turkish Journal of Botany, 35, ss.319 - 330, 2011.
ISNAD Ikinci, Nursel. "Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data". Turkish Journal of Botany 35/4 (2011), 319-330.
Sayfa Oluşturulma Tarihi
22-04-2024 16:30

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