Yıl: 2019 Cilt: 3 Sayı: 1 Sayfa Aralığı: 20 - 25 Metin Dili: İngilizce İndeks Tarihi: 14-05-2020

Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization

Öz:
New and improved genetic engineered variants of fluorescent proteins (FPs) have become usefultools for bioimaging in biomedical researches. Red fluorescent proteins (RFPs) first derivedfrom the sea anemone Discosoma show high performance in vivo labeling and imaging. mCherryis a member of RFPs which has very high photostability, resistant to photo bleaching and rapidmaturation. These advantages ensure that mCherry can be successfully fused to many proteinsand widely used for quantitative imaging techniques. In this study, the constructed recombinantplasmid pBADCherry was expressed in Escherichia coli BL21(AI) then culture conditions,inducer concentration and induction time were optimized. Results of sodium dodecyl sulfatepolyacrylamide gel electrophoresis (SDS-PAGE) analysis demonstrated that 5 hours induction at0.04% of arabinose concentration was optimal for the highest mCherry yield. The expression ofhexa histidine-tagged (6xHis) recombinant mCherry was induced by arabinose and purificationperformed using nickel (Ni2+) affinity chromatography. High throughput expression of 81 mgfluorescent protein from a liter of E. coli culture carried out in bioreactor.
Anahtar Kelime:

Belge Türü: Makale Makale Türü: Araştırma Makalesi Erişim Türü: Erişime Açık
  • 1. Shimomura, O., The discovery of aequorin and green fluorescent protein. Journal of Microscopy, 2005. 217: p. 3–15.
  • 2. Chalfie, M., Tu, Y., Euskirchen, G., Ward, W.W., Prasher, D.C., Green fluorescent protein as a marker for gene expression. Science, 1994. 263(5148): p. 802–805.
  • 3. Chudakov, D.M., Matz, M.V., Lunyakov, S., Lunyakov, K.A., Fluorescent proteins and their applications in imaging living cells and tissues. Physiological Reviews, 2010. 90(3): p.1103–1163.
  • 4. Shaner, N.C., Patterson, G.H., Davidson, M.W., Advances in fluorescent protein technology. Journal of Cell Science, 2007. 120: p. 4247–4260.
  • 5. Haddock, S.H., Mastoianni, N., Christianson, L.M., A photoactivatable green-fluorescent protein from the phylu. Ctenophora. Proceedings Biological Sciences, 2010. 277: p. 1155–1160.
  • 6. Chudakov, D.M., Belousov, V.V., Zaraisky, A.G., Novoselov, V.V., Staroverov, D.B., Zorov, D.B., Lukyanov, S., Lukyanov, K.A., Kindling fluorescent proteins for precise in vivo photolabeling. Nature Biotechnology, 2003. 21(2): p. 191–194.
  • 7. Shemiakina, I.I., Ermakova, G.V., Cranfill, P.J., Baird, M.A., Evans, R.A., Souslova, E.A, Staroverov, D.B., Gorokhovatsky, A.Y., Putintseva, E.V., Gorodnicheva, T.V., Chepurnykh, T.V, Strukova, L., Lukyanov, S., Zaraisky, A.G., Davidson, M.W., Chudakov, D.M., Shcherbo, D., A monomeric red fluorescent protein with low cytotoxicity. Nature Communications, 2012. 3(1): p. 1204.
  • 8. Campbell, R.E., Tour, O., Palmer, A.E., Steinbach, P.A., Baird, G.S., Zacharias, D.A., Tsien, R.Y., A monomeric red fluorescent protein. Proceedings of the National. Academy of Sciences, 2002. 99(12): p. 7877–7882.
  • 9. Shen, Y., Lai, T., Campbell, R.E., Red fluorescent proteins (RFPs) and RFP-based biosensors for neuronal imaging applications. Neurophotonics, 2015. 2(3): p. 031203.
  • 10. Bin, W., Yan, C., Joachim, D.M., Fluorescence fluctuation spectroscopy of mCherry in living cells. Biophysical Journal, 2009. 96(6): p. 2391–2404.
  • 11. Shaner, N.C., Campbell R.E., Steinbach P.A., Giepmans B.N., Palmer A.E., Tsien R.Y., Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nature Biotechnology, 2004. 22(12): p. 1567–1572.
  • 12. Ransom, E.M., Ellermeier, C.D., Weiss, D.S., Use of mCherry red fluorescent protein for studies of protein localization and gene expression in Clostridium difficile. Applied and Environmental Microbiology, 2015. 81(5): p. 1652–1660.
  • 13. Lee, You-Jin, Jung K.-H., Modulation of the tendency towards inclusion body formation of recombinant protein by the addition of glucose in the araBAD promoter system of Escherichia coli. Journal of Microbiology and Biotechnology, 2007. 17(11): p. 1898–1903.
  • 14. Guzman, L.-M., Belin, D., Carson, M.J., Beckwith, J., Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. Journal of Bacteriology, 1995. 177(14), p. 4121-4130.
  • 15. Newman, J.R., Fuqua C., Broad-host-range expression vectors that carry the L-arabinose-inducible Escherichia coli araBAD promoter and the araC regulator. Gene, 1999. 227: p. 197-203.
  • 16. Patkar, A., Vijayasankaran, N., Urry, D.W., Srienc F., Flow cytometer as a useful tool for process development: Rapid evaluation of expression systems. Journal of Bacteriology, 2002. 93(3): p. 217-229.
  • 17. Boström, M., Markland, K., Sandén, A.M., Hedhammar, M., Hober, S., Larsson, G., Effect of substrate feed rate on recombinant protein secretion, degradation and inclusion body formation in Escherichia coli. Applied Microbiology and Biotechnology, 2005. 68(1): p. 82-90.
  • 18. Sandén, A.M., Boström, M., Markland, K., Larsson, G., Solubility and proteolysis of the Zb-MalE and Zb-MalE31 proteins during overproduction in Escherichia coli. Biotechnology and Bioengineering, 2005. 90(2): p. 239- 247.
  • 19. Greefield, L., Boone, T., Wilcox, G., DNA sequence of the araBAD promoter in Escherichia coli B/r. Proceedings of the National Academy of Sciences, 1978. 75(10): p. 4724- 4728.
  • 20. Siegele, D.A., Hu, J.C., Gene expression from plasmids containing the araBAD promoter at subsaturating inducer concentrations represents mixed populations. Proceedings of the National Academy of Sciences, 1997. 94(15): p. 8168–8172.
  • 21. Khlebnikov, A., Risa, Ø, Skaug, T., Carrier, T., Keasling, J.D., Regulatable arabinose-inducible gene expression system with consistent control in all cells of a culture. Journal of Bacteriology, 2007. 182(24): p. 7029-7034.
  • 22. Chae H.J., Delisa M.P., Cha H.J., Weigand W.A., Rao G., Bentley W.E., Framework for online optimization of recombinant protein expression in high-cell-density Escherichia coli cultures using GFP-fusion monitoring. Biotechnology and Bioengineering, 2000. 69(3): p. 275- 285.
  • 23. Lu, C., Albano, C.R., Bentley W.E., Rao, G., Differential rates of gene expression monitored by green fluorescent protein. Biotechnology and Bioengineering, 2002. 79(4): p. 429-437.
  • 24. Laemmli, U.K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 1970. 227(5259): p. 680-685.
  • 25. Sarabipour, S., King, C., Hristova, K., Uninduced highyield bacterial expression of fluorescent proteins. Analytical Biochemistry, 2017. 449(1): p. 155–157.
  • 26. Demain, A.L., Vaishnav, P., Production of recombinant proteins by microbes and higher organisms. Biotechnology Advances, 2009. 27(3): p. 297-306.
  • 27. Shaner, N.C., Steinbach, P.A., Tsien, R.Y., A guide to choosing fluorescent proteins. Nature Methods, 2005. 2(12): p. 905–909.
APA KUDUĞ CEYLAN H, ATAMAN B, IMAMOGLU R, DÜZGÜN D, GÖKÇE İ (2019). Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization. , 20 - 25.
Chicago KUDUĞ CEYLAN HÜLYA,ATAMAN Bahadır,IMAMOGLU RIZVAN,DÜZGÜN Duygu,GÖKÇE İSA Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization. (2019): 20 - 25.
MLA KUDUĞ CEYLAN HÜLYA,ATAMAN Bahadır,IMAMOGLU RIZVAN,DÜZGÜN Duygu,GÖKÇE İSA Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization. , 2019, ss.20 - 25.
AMA KUDUĞ CEYLAN H,ATAMAN B,IMAMOGLU R,DÜZGÜN D,GÖKÇE İ Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization. . 2019; 20 - 25.
Vancouver KUDUĞ CEYLAN H,ATAMAN B,IMAMOGLU R,DÜZGÜN D,GÖKÇE İ Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization. . 2019; 20 - 25.
IEEE KUDUĞ CEYLAN H,ATAMAN B,IMAMOGLU R,DÜZGÜN D,GÖKÇE İ "Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization." , ss.20 - 25, 2019.
ISNAD KUDUĞ CEYLAN, HÜLYA vd. "Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization". (2019), 20-25.
APA KUDUĞ CEYLAN H, ATAMAN B, IMAMOGLU R, DÜZGÜN D, GÖKÇE İ (2019). Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization. International Advanced Researches and Engineering Journal, 3(1), 20 - 25.
Chicago KUDUĞ CEYLAN HÜLYA,ATAMAN Bahadır,IMAMOGLU RIZVAN,DÜZGÜN Duygu,GÖKÇE İSA Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization. International Advanced Researches and Engineering Journal 3, no.1 (2019): 20 - 25.
MLA KUDUĞ CEYLAN HÜLYA,ATAMAN Bahadır,IMAMOGLU RIZVAN,DÜZGÜN Duygu,GÖKÇE İSA Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization. International Advanced Researches and Engineering Journal, vol.3, no.1, 2019, ss.20 - 25.
AMA KUDUĞ CEYLAN H,ATAMAN B,IMAMOGLU R,DÜZGÜN D,GÖKÇE İ Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization. International Advanced Researches and Engineering Journal. 2019; 3(1): 20 - 25.
Vancouver KUDUĞ CEYLAN H,ATAMAN B,IMAMOGLU R,DÜZGÜN D,GÖKÇE İ Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization. International Advanced Researches and Engineering Journal. 2019; 3(1): 20 - 25.
IEEE KUDUĞ CEYLAN H,ATAMAN B,IMAMOGLU R,DÜZGÜN D,GÖKÇE İ "Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization." International Advanced Researches and Engineering Journal, 3, ss.20 - 25, 2019.
ISNAD KUDUĞ CEYLAN, HÜLYA vd. "Production of red fluorescent protein (mCherry) in an inducible E. coli expression system in a bioreactor, purification and characterization". International Advanced Researches and Engineering Journal 3/1 (2019), 20-25.