Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations

Yıl: 2020 Cilt: 37 Sayı: 3 Sayfa Aralığı: 145 - 153 Metin Dili: İngilizce DOI: 10.4274/tjh.galenos.2020.2019.0262 İndeks Tarihi: 27-11-2020

Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations

Öz:
Objective: Hemophilia A (HA) is the most severe X-linked inherited bleeding disorder caused by hemizygous mutations in the factor 8 (F8)gene. The aim of this study is to determine the mutation spectrum of the F8 gene in a large HA cohort from Turkey, and then to establish a phenotype-genotype correlation.Materials and Methods: All HA cases (270 patients) analyzed molecularly in the Ege University Pediatric Genetics Molecular Laboratory between March 2017 and March 2018 were included in this study. To identify intron 22 inversion (Inv22), intron 1 inversion (Inv1), small deletion/insertions, and point mutations, molecular analyses of F8 were performed using a sequential application of molecular techniques. Results: The mutation detection success rate was 95.2%. Positive Inv22 was found in 106 patients (39.3%), Inv1 was found in 4 patients (1.5%), and 106 different disease-causing sequence variants were identified in 137 patients (50.6%). In 10 patients (3.7%), amplification failures involving one or more exonic regions, considered to be large intragenic deletions, were identified. Of 106 different F8 mutations, 36 were novel. The relationship between F8 genotype and inhibitor development was considered significant.Conclusion: A high mutation detection rate was achieved via the broad molecular techniques applied in this study, including 36 novel mutations. With regard to mutation types, mutation distribution and their impact on clinical severity and inhibitor development were found to be similar to those previously reported in other hemophilia population studies.
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  • 1. White GC 2nd, Rosendaal F, Aledort LM, Lusher JM, Rothschild C, Ingerslev J; Factor VIII and Factor IX Subcommittee. Definitions in hemophilia. Recommendation of the scientific subcommittee on factor VIII and factor IX of the scientific and standardization committee of the International Society on Thrombosis and Haemostasis. Thromb Haemost 2001;85:560.
  • 2. Vehar GA, Keyt B, Eaton D, Rodriguez H, O’Brien DP, Rotblat F, Oppermann H, Keck R, Wood WI, Harkins RN, Tuddenham EG, Lawn RM, Capon DJ. Structure of human factor VIII. Nature 1984;312:337-342.
  • 3. Toole JJ, Knopf JL, Wozney JM, Sultzman LA, Buecker JL, Pittman DD, Kaufman RJ, Brown E, Shoemaker C, Orr EC, Amphlett GW, Foster WB, Coe ML, Knutson GJ, Fass DN, Hewick RM. Molecular cloning of a cDNA encoding human antihaemophilic factor. Nature 1984;312:342-347.
  • 4. Johnsen JM, Fletcher SN, Huston H, Roberge S, Martin BK, Kircher M, Josephson NC, Shendure J, Ruuska S, Koerper MA, Morales J, Pierce GF, Aschman DJ, Konkle BA. Novel approach to genetic analysis and results in 3000 hemophilia patients enrolled in the My Life, Our Future initiative. Blood Adv 2017;1:824-834.
  • 5. Rallapalli PM, Kemball-Cook G, Tuddenham EG, Gomez K, Perkins SJ. An interactive mutation database for human coagulation factor IX provides novel insights into the phenotypes and genetics of hemophilia B. J Thromb Haemost 2013;11:1329-1340.
  • 6. Stenson PD, Ball EV, Mort M, Phillips AD, Shiel JA, Thomas NS, Abeysinghe S, Krawczak M, Cooper DN. Human Gene Mutation Database (HGMD): 2003 update. Hum Mutat 2003;21:577-581.
  • 7. Guo Z, Yang L, Qin X, Liu X, Zhang Y. Spectrum of molecular defects in 216 Chinese families with hemophilia A: identification of noninversion mutation hot spots and 42 novel mutations. Clin Appl Thromb Hemost 2018;24:70-78.
  • 8. Antonarakis SE, Rossiter JP, Young M, Horst J, de Moerloose P, Sommer SS, Ketterling RP, Kazazian HH Jr, Négrier C, Vinciguerra C, Gitschier J, Goossens M, Girodon E, Ghanem N, Plassa F, Lavergne JM, Vidaud M, Costa JM, Laurian Y, Lin SW, Lin SR, Shen MC, Lillicrap D, Taylor SA, Windsor S, Valleix SV, Nafa K, Sultan Y, Delpech M, Vnencak-Jones CL, Phillips JA 3rd, Ljung RC, Koumbarelis E, Gialeraki A, Mandalaki T, Jenkins PV, Collins PW, Pasi KJ, Goodeve A, Peake I, Preston FE, Schwartz M, Scheibel E, Ingerslev J, Cooper DN, Millar DS, Kakkar VV, Giannelli F, Naylor JA, Tizzano EF, Baiget M, Domenech M, Altisent C, Tusell J, Beneyto M, Lorenzo JI, Gaucher C, Mazurier C, Peerlinck K, Matthijs G, Cassiman JJ, Vermylen J, Mori PG, Acquila M, Caprino D, Inaba H. Factor VIII gene inversions in severe hemophilia A: results of an international consortium study. Blood 1995;86:2206-2212.
  • 9. Bagnall RD, Waseem N, Green PM, Giannelli F. Recurrent inversion breaking intron 1 of the factor VIII gene is a frequent cause of severe hemophilia A. Blood 2002;99:168-174.
  • 10. Margaglione M, Intrieri M. Genetic risk factors and inhibitor development in hemophilia: What is known and searching for the unknown. Semin Thromb Hemost 2018;44:509-516.
  • 11. Verbruggen B, Novakova I, Wessels H, Boezeman J, van den Berg M, Mauser-Bunschoten E. The Nijmegen modification of the Bethesda assay for factor VIII: C inhibitors: improved specificity and reliability. Thromb Haemost 1995;73:247-251.
  • 12. Rossetti LC, Radic CP, Larripa IB, De Brasi CD. Developing a new generation of tests for genotyping hemophilia-causative rearrangements involving int22h and int1h hotspots in the factor VIII gene. J Thromb Haemost 2008;6:830-836.
  • 13. Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med 2015;17:405-424.
  • 14. Schwarz JM, Rödelsperger C, Schuelke M, Seelow D. MutationTaster evaluates disease-causing potential of sequence alterations. Nat Methods 2010;7:575-576.
  • 15. Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR. A method and server for predicting damaging missense mutations. Nat Methods 2010;7:248-249.
  • 16. Kumar P, Henikoff S, Ng PC. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 2009;4:1073-1081.
  • 17. Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A. Detection of nonneutral substitution rates on mammalian phylogenies. Genome Res 2010;20:110-121.
  • 18. Davydov EV, Goode DL, Sirota M, Cooper GM, Sidow A, Batzoglou S. Identifying a high fraction of the human genome to be under selective constraint using GERP++. PLoS Comput Biol 2010;6:e1001025.
  • 19. Gouw SC, van den Berg HM, Fischer K, Auerswald G, Carcao M, Chalmers E, Chambost H, Kurnik K, Liesner R, Petrini P, Platokouki H, Altisent C, Oldenburg J, Nolan B, Garrido RP, Mancuso ME, Rafowicz A, Williams M, Clausen N, Middelburg RA, Ljung R, van der Bom JG; PedNet and Research of Determinants of INhibitor development (RODIN) Study Group. Intensity of factor VIII treatment and inhibitor development in children with severe hemophilia A: the RODIN study. Blood 2013;121:4046-4055.
  • 20. Robinson JT, Thorvaldsdottir H, Winckler W, Guttman M, Lander ES, Getz G, Mesirov JP. Integrative genomics viewer. Nat Biotechnol 2011;29:24-26.
  • 21. Tatlı Güneş B, Önder Siviş Z, Ataseven E, Malbora B, Türker M, Belen FB, Atabay B, Atik T, Işık E, Özkınay F. Intracranial bleeding in a female hemophilia patient: molecular analysis of the factor 8 gene and determination of a novel mutation. Turk J Hematol 2018;35:202-203.
  • 22. Oldenburg J, Ananyeva NM, Saenko EL. Molecular basis of haemophilia A. Haemophilia 2004;10(Suppl 4):133-139.
  • 23. Albanez S, Ruiz-Saez A, Boadas A, de Bosch N, Porco A. Identification of factor VIII gene mutations in patients with severe haemophilia A in Venezuela: identification of seven novel mutations. Haemophilia 2011;17:913-918.
  • 24. Riccardi F, Tagliaferri A, Martorana D, Rivolta GF, Valdrè L, Rodorigo G, Biasoli C, D’Incà M, Serino ML, Macchi S, Vincenzi D, Arbasi M, Pedrazzi P, Volta M, Di Perna C, Ippolito L, Savi M, Neri TM. Spectrum of F8 gene mutations in haemophilia A patients from a region of Italy: identification of 23 new mutations. Haemophilia 2010;16:791-800.
  • 25. Chen YC, Hu SH, Cheng SN, Chao TY. Genetic analysis of haemophilia A in Taiwan. Haemophilia 2010;16:538-544.
  • 26. El-Maarri O, Kavakli K, Caglayan SH. Intron 22 inversions in the Turkish haemophilia A patients: prevalence and haplotype analysis. Haemophilia 1999;5:169-173.
  • 27. Timur AA, Gürgey A, Aktuglu G, Kavakli K, Canatan D, Olek K, Caglayan SH. Molecular pathology of haemophilia A in Turkish patients: identification of 36 independent mutations. Haemophilia 2001;7:475-481.
  • 28. Peyvandi F, Mannucci PM, Palla R, Rosendaal FR. SIPPET: Methodology, analysis and generalizability. Haemophilia 2017;23:353-361.
APA ATIK T, isik e, Akgun B, Ozkinay F, Onay H, SHAMSALI M, KAVAKLO K, BALKAN C, sezgin evim m, BAYTAN B, Tüysüz G, Kupesiz O, ozbek n, culha v, Sahin F, Şalcıoğlu Z, Tahtakesen T, ALBAYRAK C, Oymak Y, UNAL E, belen f, KESKİN E (2020). Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations. , 145 - 153. 10.4274/tjh.galenos.2020.2019.0262
Chicago ATIK TAHIR,isik esra,Akgun Bilcag,Ozkinay Ferda,Onay Huseyin,SHAMSALI Moharram,KAVAKLO Kaan,BALKAN CAN,sezgin evim melike,BAYTAN Birol,Tüysüz Gülen,Kupesiz Osman Alphan,ozbek namik yasar,culha vildan,Sahin Fahri,Şalcıoğlu Zafer,Tahtakesen Tuba Nur,ALBAYRAK Canan Uçar,Oymak Yeşim,UNAL Ekrem,belen fatma burcu,KESKİN Ebru Yılmaz Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations. (2020): 145 - 153. 10.4274/tjh.galenos.2020.2019.0262
MLA ATIK TAHIR,isik esra,Akgun Bilcag,Ozkinay Ferda,Onay Huseyin,SHAMSALI Moharram,KAVAKLO Kaan,BALKAN CAN,sezgin evim melike,BAYTAN Birol,Tüysüz Gülen,Kupesiz Osman Alphan,ozbek namik yasar,culha vildan,Sahin Fahri,Şalcıoğlu Zafer,Tahtakesen Tuba Nur,ALBAYRAK Canan Uçar,Oymak Yeşim,UNAL Ekrem,belen fatma burcu,KESKİN Ebru Yılmaz Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations. , 2020, ss.145 - 153. 10.4274/tjh.galenos.2020.2019.0262
AMA ATIK T,isik e,Akgun B,Ozkinay F,Onay H,SHAMSALI M,KAVAKLO K,BALKAN C,sezgin evim m,BAYTAN B,Tüysüz G,Kupesiz O,ozbek n,culha v,Sahin F,Şalcıoğlu Z,Tahtakesen T,ALBAYRAK C,Oymak Y,UNAL E,belen f,KESKİN E Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations. . 2020; 145 - 153. 10.4274/tjh.galenos.2020.2019.0262
Vancouver ATIK T,isik e,Akgun B,Ozkinay F,Onay H,SHAMSALI M,KAVAKLO K,BALKAN C,sezgin evim m,BAYTAN B,Tüysüz G,Kupesiz O,ozbek n,culha v,Sahin F,Şalcıoğlu Z,Tahtakesen T,ALBAYRAK C,Oymak Y,UNAL E,belen f,KESKİN E Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations. . 2020; 145 - 153. 10.4274/tjh.galenos.2020.2019.0262
IEEE ATIK T,isik e,Akgun B,Ozkinay F,Onay H,SHAMSALI M,KAVAKLO K,BALKAN C,sezgin evim m,BAYTAN B,Tüysüz G,Kupesiz O,ozbek n,culha v,Sahin F,Şalcıoğlu Z,Tahtakesen T,ALBAYRAK C,Oymak Y,UNAL E,belen f,KESKİN E "Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations." , ss.145 - 153, 2020. 10.4274/tjh.galenos.2020.2019.0262
ISNAD ATIK, TAHIR vd. "Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations". (2020), 145-153. https://doi.org/10.4274/tjh.galenos.2020.2019.0262
APA ATIK T, isik e, Akgun B, Ozkinay F, Onay H, SHAMSALI M, KAVAKLO K, BALKAN C, sezgin evim m, BAYTAN B, Tüysüz G, Kupesiz O, ozbek n, culha v, Sahin F, Şalcıoğlu Z, Tahtakesen T, ALBAYRAK C, Oymak Y, UNAL E, belen f, KESKİN E (2020). Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations. Turkish Journal of Hematology, 37(3), 145 - 153. 10.4274/tjh.galenos.2020.2019.0262
Chicago ATIK TAHIR,isik esra,Akgun Bilcag,Ozkinay Ferda,Onay Huseyin,SHAMSALI Moharram,KAVAKLO Kaan,BALKAN CAN,sezgin evim melike,BAYTAN Birol,Tüysüz Gülen,Kupesiz Osman Alphan,ozbek namik yasar,culha vildan,Sahin Fahri,Şalcıoğlu Zafer,Tahtakesen Tuba Nur,ALBAYRAK Canan Uçar,Oymak Yeşim,UNAL Ekrem,belen fatma burcu,KESKİN Ebru Yılmaz Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations. Turkish Journal of Hematology 37, no.3 (2020): 145 - 153. 10.4274/tjh.galenos.2020.2019.0262
MLA ATIK TAHIR,isik esra,Akgun Bilcag,Ozkinay Ferda,Onay Huseyin,SHAMSALI Moharram,KAVAKLO Kaan,BALKAN CAN,sezgin evim melike,BAYTAN Birol,Tüysüz Gülen,Kupesiz Osman Alphan,ozbek namik yasar,culha vildan,Sahin Fahri,Şalcıoğlu Zafer,Tahtakesen Tuba Nur,ALBAYRAK Canan Uçar,Oymak Yeşim,UNAL Ekrem,belen fatma burcu,KESKİN Ebru Yılmaz Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations. Turkish Journal of Hematology, vol.37, no.3, 2020, ss.145 - 153. 10.4274/tjh.galenos.2020.2019.0262
AMA ATIK T,isik e,Akgun B,Ozkinay F,Onay H,SHAMSALI M,KAVAKLO K,BALKAN C,sezgin evim m,BAYTAN B,Tüysüz G,Kupesiz O,ozbek n,culha v,Sahin F,Şalcıoğlu Z,Tahtakesen T,ALBAYRAK C,Oymak Y,UNAL E,belen f,KESKİN E Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations. Turkish Journal of Hematology. 2020; 37(3): 145 - 153. 10.4274/tjh.galenos.2020.2019.0262
Vancouver ATIK T,isik e,Akgun B,Ozkinay F,Onay H,SHAMSALI M,KAVAKLO K,BALKAN C,sezgin evim m,BAYTAN B,Tüysüz G,Kupesiz O,ozbek n,culha v,Sahin F,Şalcıoğlu Z,Tahtakesen T,ALBAYRAK C,Oymak Y,UNAL E,belen f,KESKİN E Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations. Turkish Journal of Hematology. 2020; 37(3): 145 - 153. 10.4274/tjh.galenos.2020.2019.0262
IEEE ATIK T,isik e,Akgun B,Ozkinay F,Onay H,SHAMSALI M,KAVAKLO K,BALKAN C,sezgin evim m,BAYTAN B,Tüysüz G,Kupesiz O,ozbek n,culha v,Sahin F,Şalcıoğlu Z,Tahtakesen T,ALBAYRAK C,Oymak Y,UNAL E,belen f,KESKİN E "Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations." Turkish Journal of Hematology, 37, ss.145 - 153, 2020. 10.4274/tjh.galenos.2020.2019.0262
ISNAD ATIK, TAHIR vd. "Factor 8 Gene Mutation Spectrum of 270 Patients with Hemophilia A: Identification of 36 Novel Mutations". Turkish Journal of Hematology 37/3 (2020), 145-153. https://doi.org/10.4274/tjh.galenos.2020.2019.0262