Diversity of Lactococcus garvieae by Genomic Approaches

Salih KUMRU (Recep Tayyip Erdoğan Üniversitesi, Su Ürünleri Fakültesi, Rize, Türkiye)
JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES
3 0
Yıl: 2021 Cilt: 6 Sayı: 4 Sayfa Aralığı: 506 - 513 Metin Dili: İngilizce DOI: 10.35229/jaes.894280 İndeks Tarihi: 29-07-2022

Diversity of Lactococcus garvieae by Genomic Approaches

Öz:
Lactococcus garvieae is the Gram-positive cocci bacteria known as the causative agent of infectious systemic disease. It causes fatal hemorrhagic septicemia in mainly cultured fish species, animals, and humans worldwide. Comparative genome analyses provide valuable information about genome identification and unique genomic features. In this study, the available L. garvieae genomes are evaluated by comparative genomics approaches. The results indicated that there are four distinct genetic groups of L. garvieae based on the Average Nucleotide Identity (ANI) value. The phylogenetic tree was produced using 16S rRNA sequence has similar genetic variances with the publicly available L. garvieae genome data on NCBI and supports the ANI value. In silico analysis of antimicrobial resistance revealed that each L. garvieae genome groups have unique antimicrobial resistance class genes, even though, all genomes have a common antibiotic-resistant class. Analyzing results of the antimicrobial resistance supports the L. garvieae genetic variations. This extensively comparative approach will provide new insights into the understanding of L. garvieae genomic diversity and antimicrobial resistance.
Anahtar Kelime: Comparative genomics Lactococcus garvieae Phylogenetic tree, Antibiotic resistance

Lactococcus garvieae'nin Genomik Yaklaşımlarla Çeşitliliği

Öz:
Lactococcus garvieae, bulaşıcı sistemik hastalığın etkeni olarak bilinen Gram pozitif kok bir bakteridir. Dünya çapında ağırlıklı olarak yetiştiriciliği yapılan balık türlerinde, hayvanlarda ve insanlarda ölümcül hemorajik septisemiye neden olmaktadır. Karşılaştırmalı genom analizleri, genomların tanımlaması ve benzersiz genomik özellikler hakkında bilgiler sağlarlar. Bu çalışmada, mevcut L. garvieae genomları karşılaştırmalı genomik yaklaşımlarla değerlendirilmiştir. Sonuçlar, Ortalama Nükleotid Kimliği (ANI) değerine dayalı olarak L. garvieae'nin dört farklı genetik gruba sahip olduğunu göstermektedir. Filogenetik ağaç, 16S rRNA genom bölgesi dizisi kullanılarak üretilmiş, NCBI üzerindeki halka açık L. garvieae genom verileriyle benzer genetik farklılıklara sahip olarak belirlenmiş ve ANI değerini desteklemiş olacak şekilde oluşmuştur. Yapılan antimikrobiyal dirençli genlerin in silico analizi ile tüm genomların ortak antimikrobiyal dirençli gen sınıfına sahip olmasına rağmen, her L. garvieae genom grubunun benzersiz antimikrobiyal direnç sınıfı genlerine sahip olduğunu ortaya çıkarmıştır. Yapılan antimikrobiyal direnç analiz sonuçları, L. garvieae genetik varyasyonlarını desteklemektedir. Bu kapsamlı karşılaştırmalı genom analizi yaklaşımı, L. garvieae’nın genomik çeşitliliği ve antimikrobiyal direncin anlaşılmasına yönelik yeni anlayışlar ortaya koymaktadır.
Anahtar Kelime: Lactococcus garvieae

Belge Türü: Makale Makale Türü: Araştırma Makalesi Erişim Türü: Erişime Açık
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APA Kumru S (2021). Diversity of Lactococcus garvieae by Genomic Approaches. , 506 - 513. 10.35229/jaes.894280
Chicago Kumru Salih Diversity of Lactococcus garvieae by Genomic Approaches. (2021): 506 - 513. 10.35229/jaes.894280
MLA Kumru Salih Diversity of Lactococcus garvieae by Genomic Approaches. , 2021, ss.506 - 513. 10.35229/jaes.894280
AMA Kumru S Diversity of Lactococcus garvieae by Genomic Approaches. . 2021; 506 - 513. 10.35229/jaes.894280
Vancouver Kumru S Diversity of Lactococcus garvieae by Genomic Approaches. . 2021; 506 - 513. 10.35229/jaes.894280
IEEE Kumru S "Diversity of Lactococcus garvieae by Genomic Approaches." , ss.506 - 513, 2021. 10.35229/jaes.894280
ISNAD Kumru, Salih. "Diversity of Lactococcus garvieae by Genomic Approaches". (2021), 506-513. https://doi.org/10.35229/jaes.894280
APA Kumru S (2021). Diversity of Lactococcus garvieae by Genomic Approaches. JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES, 6(4), 506 - 513. 10.35229/jaes.894280
Chicago Kumru Salih Diversity of Lactococcus garvieae by Genomic Approaches. JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES 6, no.4 (2021): 506 - 513. 10.35229/jaes.894280
MLA Kumru Salih Diversity of Lactococcus garvieae by Genomic Approaches. JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES, vol.6, no.4, 2021, ss.506 - 513. 10.35229/jaes.894280
AMA Kumru S Diversity of Lactococcus garvieae by Genomic Approaches. JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES. 2021; 6(4): 506 - 513. 10.35229/jaes.894280
Vancouver Kumru S Diversity of Lactococcus garvieae by Genomic Approaches. JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES. 2021; 6(4): 506 - 513. 10.35229/jaes.894280
IEEE Kumru S "Diversity of Lactococcus garvieae by Genomic Approaches." JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES, 6, ss.506 - 513, 2021. 10.35229/jaes.894280
ISNAD Kumru, Salih. "Diversity of Lactococcus garvieae by Genomic Approaches". JOURNAL OF ANATOLIAN ENVIRONMENTAL AND ANIMAL SCIENCES 6/4 (2021), 506-513. https://doi.org/10.35229/jaes.894280
Sayfa Oluşturulma Tarihi
23-04-2024 22:5

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