Identification and characterization of the Pvul-GASA gene family in the
Phaseolus vulgaris and expression patterns under salt stress

OKAY, Aybüke; Aras, Sumer; Górska, Marta; Büyük, İlker; ILHAN, EMRE

doi:10.3906/bot-2101-13

Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress

İlker BÜYÜK, (Ankara Üniversitesi, Fen Fakültesi, Biyoloji Bölümü, Ankara, Türkiye)

Aybüke OKAY, (Ankara Üniversitesi, Fen Fakültesi, Biyoloji Bölümü, Ankara, Türkiye)

Marta GORSKA, (Ankara Üniversitesi, Fen Fakültesi, Biyoloji Bölümü, Ankara, Türkiye)

Emre İLHAN, (Erzurum Teknik Üniversitesi, Fen Fakültesi, Moleküler Biyoloji ve Genetik Bölümü, Erzurum, Türkiye)

Emine Sümer ARAS (Ankara Üniversitesi, Fen Fakültesi, Biyoloji Bölümü, Ankara, Türkiye)

Turkish Journal of Botany

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Yıl: 2021 Cilt: 45 Sayı: Özel sayı 1 Sayfa Aralığı: 655 - 670 Metin Dili: İngilizce DOI: 10.3906/bot-2101-13 İndeks Tarihi: 17-06-2022

Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress

Öz:

GASA (Gibberellic acid stimulated in Arabidopsis) is an important gene family that has important roles in both the developmental and physiological processes. In this study, 23 GASA genes in common bean were identified and detailed bioinformatics analyzes were conducted at both gene and protein levels. Pvul-GASA proteins were categorized into three clusters, and a total of 13 duplication events (12 segmental and one tandem) were shown to play a role in the expansion of the GASA gene family in Phaseolus vulgaris L. The identified Pvul-GASAs have been shown to be linked to stress and hormone signaling pathways. In addition, some of the stress-related miRNAs, such as miR164 and miR396, have been identified as targeting Pvul-GASA genes, which have also been shown to play a role in salt stress response based on expression data. The alterations in the expressions of Pvul-GASA-1, Pvul-GASA-12, Pvul-GASA-16, Pvul-GASA-18 and Pvul-GASA-23 genes between control and salt-stressed common bean cultivars have indicated their possible role in the stress response. This research is the first research on the in-silico detection and characterization of Pvul-GASA genes in common bean, in which the levels of gene expression were also analyzed.

Anahtar Kelime:

Belge Türü: Makale Makale Türü: Araştırma Makalesi Erişim Türü: Erişime Açık

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APA	Büyük İ, OKAY A, Górska M, ILHAN E, Aras S (2021). Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress. , 655 - 670. 10.3906/bot-2101-13
Chicago	Büyük İlker,OKAY Aybüke,Górska Marta,ILHAN EMRE,Aras Sumer Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress. (2021): 655 - 670. 10.3906/bot-2101-13
MLA	Büyük İlker,OKAY Aybüke,Górska Marta,ILHAN EMRE,Aras Sumer Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress. , 2021, ss.655 - 670. 10.3906/bot-2101-13
AMA	Büyük İ,OKAY A,Górska M,ILHAN E,Aras S Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress. . 2021; 655 - 670. 10.3906/bot-2101-13
Vancouver	Büyük İ,OKAY A,Górska M,ILHAN E,Aras S Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress. . 2021; 655 - 670. 10.3906/bot-2101-13
IEEE	Büyük İ,OKAY A,Górska M,ILHAN E,Aras S "Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress." , ss.655 - 670, 2021. 10.3906/bot-2101-13
ISNAD	Büyük, İlker vd. "Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress". (2021), 655-670. https://doi.org/10.3906/bot-2101-13

APA	Büyük İ, OKAY A, Górska M, ILHAN E, Aras S (2021). Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress. Turkish Journal of Botany, 45(Özel sayı 1), 655 - 670. 10.3906/bot-2101-13
Chicago	Büyük İlker,OKAY Aybüke,Górska Marta,ILHAN EMRE,Aras Sumer Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress. Turkish Journal of Botany 45, no.Özel sayı 1 (2021): 655 - 670. 10.3906/bot-2101-13
MLA	Büyük İlker,OKAY Aybüke,Górska Marta,ILHAN EMRE,Aras Sumer Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress. Turkish Journal of Botany, vol.45, no.Özel sayı 1, 2021, ss.655 - 670. 10.3906/bot-2101-13
AMA	Büyük İ,OKAY A,Górska M,ILHAN E,Aras S Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress. Turkish Journal of Botany. 2021; 45(Özel sayı 1): 655 - 670. 10.3906/bot-2101-13
Vancouver	Büyük İ,OKAY A,Górska M,ILHAN E,Aras S Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress. Turkish Journal of Botany. 2021; 45(Özel sayı 1): 655 - 670. 10.3906/bot-2101-13
IEEE	Büyük İ,OKAY A,Górska M,ILHAN E,Aras S "Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress." Turkish Journal of Botany, 45, ss.655 - 670, 2021. 10.3906/bot-2101-13
ISNAD	Büyük, İlker vd. "Identification and characterization of the Pvul-GASA gene family in the Phaseolus vulgaris and expression patterns under salt stress". Turkish Journal of Botany 45/Özel sayı 1 (2021), 655-670. https://doi.org/10.3906/bot-2101-13