Determination of plant-specific retrotransposons in chicken

Marakli, Sevgi; BÜLBÜL, Cihat Erdem; BILGI, FATIH; MERCAN, Levent

doi:10.3906/vet-2102-56

Determination of plant-specific retrotransposons in chicken

Levent MERCAN, (Ondokuz Mayıs Üniversitesi, Ziraat Fakültesi, Tarımsal Biyoteknoloji Bölümü, Türkiye)

Cihat Erdem BÜLBÜL, (Ondokuz Mayıs Üniversitesi, Ziraat Fakültesi, Tarımsal Biyoteknoloji Bölümü, Türkiye)

Fatih BİLGİ, (Ondokuz Mayıs Üniversitesi, Ziraat Fakültesi, Tarımsal Biyoteknoloji Bölümü, Türkiye)

Sevgi MARAKLI (Amasya Üniversitesi, Sabuncuoğlu Şerefeddin Sağlık Hizmetleri Meslek Yüksekokulu, Tıbbi Hizmetler ve Teknikler Bölümü, Amasya, Türkiye)

Turkish Journal of Veterinary and Animal Sciences

2 0

Yıl: 2022 Cilt: 46 Sayı: 1 Sayfa Aralığı: 67 - 73 Metin Dili: İngilizce DOI: 10.3906/vet-2102-56 İndeks Tarihi: 04-10-2022

Determination of plant-specific retrotransposons in chicken

Öz:

Mobile genetic elements are also known as transposons, comprising a significant proportion of plant and animal genomes. Retrotransposons, a class of transposons, move copy and paste mechanism and, therefore, cause genome obesity. Moreover, the transferability of retrotransposons within and between different kingdoms has provided valuable information for evolutionary relationships in addition to detailed knowledge about genomes. We identified barley-specific retrotransposons (Nikita and Sukkula) and determined polymorphism ratios of these retrotransposons in a chicken genome for the first time to gain new insights for retrotransposons found in different genomes. Transposon sequences belonging to chicken and barley genomes were also investigated to understand the evolutionary relationships. For this purpose, the samples from Turkish native chicken Gerze were analyzed using a retrotransposon-based molecular marker, IRAP (inter-retrotransposon amplified polymorphism). As a result of the analyses, there was no polymorphism among the samples in Sukkula analysis, while Nikita showed 0%–60% polymorphism. Moreover, in silico analyses also presented that these two retrotransposons are closely related to other chicken retrotransposons. Obtaining results could offer a practical approach for chicken genome analyses, especially for the identification of genes to obtain desired traits.

Anahtar Kelime:

Belge Türü: Makale Makale Türü: Araştırma Makalesi Erişim Türü: Erişime Açık

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APA	MERCAN L, BÜLBÜL C, BILGI F, Marakli S (2022). Determination of plant-specific retrotransposons in chicken. , 67 - 73. 10.3906/vet-2102-56
Chicago	MERCAN Levent,BÜLBÜL Cihat Erdem,BILGI FATIH,Marakli Sevgi Determination of plant-specific retrotransposons in chicken. (2022): 67 - 73. 10.3906/vet-2102-56
MLA	MERCAN Levent,BÜLBÜL Cihat Erdem,BILGI FATIH,Marakli Sevgi Determination of plant-specific retrotransposons in chicken. , 2022, ss.67 - 73. 10.3906/vet-2102-56
AMA	MERCAN L,BÜLBÜL C,BILGI F,Marakli S Determination of plant-specific retrotransposons in chicken. . 2022; 67 - 73. 10.3906/vet-2102-56
Vancouver	MERCAN L,BÜLBÜL C,BILGI F,Marakli S Determination of plant-specific retrotransposons in chicken. . 2022; 67 - 73. 10.3906/vet-2102-56
IEEE	MERCAN L,BÜLBÜL C,BILGI F,Marakli S "Determination of plant-specific retrotransposons in chicken." , ss.67 - 73, 2022. 10.3906/vet-2102-56
ISNAD	MERCAN, Levent vd. "Determination of plant-specific retrotransposons in chicken". (2022), 67-73. https://doi.org/10.3906/vet-2102-56

APA	MERCAN L, BÜLBÜL C, BILGI F, Marakli S (2022). Determination of plant-specific retrotransposons in chicken. Turkish Journal of Veterinary and Animal Sciences, 46(1), 67 - 73. 10.3906/vet-2102-56
Chicago	MERCAN Levent,BÜLBÜL Cihat Erdem,BILGI FATIH,Marakli Sevgi Determination of plant-specific retrotransposons in chicken. Turkish Journal of Veterinary and Animal Sciences 46, no.1 (2022): 67 - 73. 10.3906/vet-2102-56
MLA	MERCAN Levent,BÜLBÜL Cihat Erdem,BILGI FATIH,Marakli Sevgi Determination of plant-specific retrotransposons in chicken. Turkish Journal of Veterinary and Animal Sciences, vol.46, no.1, 2022, ss.67 - 73. 10.3906/vet-2102-56
AMA	MERCAN L,BÜLBÜL C,BILGI F,Marakli S Determination of plant-specific retrotransposons in chicken. Turkish Journal of Veterinary and Animal Sciences. 2022; 46(1): 67 - 73. 10.3906/vet-2102-56
Vancouver	MERCAN L,BÜLBÜL C,BILGI F,Marakli S Determination of plant-specific retrotransposons in chicken. Turkish Journal of Veterinary and Animal Sciences. 2022; 46(1): 67 - 73. 10.3906/vet-2102-56
IEEE	MERCAN L,BÜLBÜL C,BILGI F,Marakli S "Determination of plant-specific retrotransposons in chicken." Turkish Journal of Veterinary and Animal Sciences, 46, ss.67 - 73, 2022. 10.3906/vet-2102-56
ISNAD	MERCAN, Levent vd. "Determination of plant-specific retrotransposons in chicken". Turkish Journal of Veterinary and Animal Sciences 46/1 (2022), 67-73. https://doi.org/10.3906/vet-2102-56