The role of motivation and its means on the productivity and effectiveness has been discussed for many years in management and organization literature. Because, organizational success depends on the skills and willingness of the workers employed in an organization. Hospitals are defined as matrix organizations that gather different health care professionals to produce health care services. Though different health care professionals play vital roles in producing health care services, physicians take the primary responsibility. In this study, it was surveyed how much the expectations of deputy of head physicians working at the hospitals belonging to Department of Social Insurance Organization from the motivation means that were available in the hospitals were met, and whether available motivation means had an important effect on the degree of job satisfaction were also surveyed. Factor analysis and multiple regression analysis as well as correlation analysis were used to analyze the data. According to the results of factor analysis, 19 motivation means were grouped in 6 categories. The results of the analyses showed that organizational characteristics had played more important role on the job satisfaction than the individual characteristics of the deputy of head physicians.